Package: hybridModels 0.3.7
hybridModels: An R Package for the Stochastic Simulation of Disease Spreading in Dynamic Networks
Simulates stochastic hybrid models for transmission of infectious diseases in dynamic networks. It is a metapopulation model in which each node in the network is a sub-population and disease spreads within nodes and among them, combining two approaches: stochastic simulation algorithm (<doi:10.1146/annurev.physchem.58.032806.104637>) and individual-based approach, respectively. Equations that models spread within nodes are customizable and there are two link types among nodes: migration and influence (commuting). More information in Fernando S. Marques, Jose H. H. Grisi-Filho, Marcos Amaku et al. (2020) <doi:10.18637/jss.v094.i06>.
Authors:
hybridModels_0.3.7.tar.gz
hybridModels_0.3.7.zip(r-4.5)hybridModels_0.3.7.zip(r-4.4)hybridModels_0.3.7.zip(r-4.3)
hybridModels_0.3.7.tgz(r-4.4-any)hybridModels_0.3.7.tgz(r-4.3-any)
hybridModels_0.3.7.tar.gz(r-4.5-noble)hybridModels_0.3.7.tar.gz(r-4.4-noble)
hybridModels_0.3.7.tgz(r-4.4-emscripten)hybridModels_0.3.7.tgz(r-4.3-emscripten)
hybridModels.pdf |hybridModels.html✨
hybridModels/json (API)
NEWS
| # Install 'hybridModels' in R: |
| install.packages('hybridModels', repos = c('https://fernandosm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fernandosm/hybridmodels/issues
- networkSample - Daily record of animal's movement (from 2012 to 2013).
- nodesCensus - Information about animal premises (from 2012 to 2013).
Last updated 4 years agofrom:63704b8323. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win | NOTE | Nov 18 2024 |
| R-4.5-linux | NOTE | Nov 18 2024 |
| R-4.4-win | OK | Nov 18 2024 |
| R-4.4-mac | OK | Nov 18 2024 |
| R-4.3-win | OK | Nov 18 2024 |
| R-4.3-mac | OK | Nov 18 2024 |
Exports:buildModelClassfindContactChainhybridModelsimHM
Dependencies:clicodetoolscolorspacedigestdoParalleldoRNGfansifarverforeachggplot2GillespieSSAgluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangrngtoolsscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| It builds an object of a pre-specified class. | buildModelClass |
| Finding elements in contact chains of a dynamic network. | findContactChain |
| Hybrid model simulation. | hybridModel |
| hybridModels: an R package for stochastic simulation of disease spreading in dynamic networks. | hybridModels |
| Daily record of animal's movement (from 2012 to 2013). | networkSample |
| Information about animal premises (from 2012 to 2013). | nodesCensus |
| Summary plots for hybrid Models | plot plot.HM |
| It runs the chosen hybrid model. | simHM |
| summary for hybrid models | summary summary.HM |
